Experiment description: Juicer version 1.6; BWA 0.7.17-r1188; 10 threads; openjdk version "11.0.13" 2021-10-19; /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer/scripts/juicer.sh -t 10 -D /Data/UserData/FairWind/Ya.Cloud/core/pipeline/juicer -g hg19 -z /Data/DataBases/hg19_Canonic/hg19.fa -p /Data/DataBases/hg19_Canonic/hg19.chrom.sizes -s DpnII -y /Data/DataBases/hg19_Canonic/hg19_DpnII_RS.txt -d /Data/NGS_Data/20210714_INC_COST_3DBenchmark/hg19_new/GM12878                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
Sequenced Read Pairs:  567,550,645
 Normal Paired: 434,957,691 (76.64%)
 Chimeric Paired: 93,923,054 (16.55%)
 Chimeric Ambiguous: 23,903,110 (4.21%)
 Unmapped: 14,766,790 (2.60%)
 Ligation Motif Present: 226,511,070 (39.91%)
Alignable (Normal+Chimeric Paired): 528,880,745 (93.19%)
WARNING: sun.reflect.Reflection.getCallerClass is not supported. This will impact performance.
WARN [2022-01-28T17:10:00,415]  [Globals.java:138] [main]  Development mode is enabled
Unique Reads: 511,798,759 (90.18%)
PCR Duplicates: 17,081,986 (3.01%)
Optical Duplicates: 0 (0.00%)
Library Complexity Estimate: 8,010,162,315
Intra-fragment Reads: 16,360,399 (2.88% / 3.20%)
Below MAPQ Threshold: 96,107,145 (16.93% / 18.78%)
Hi-C Contacts: 399,331,215 (70.36% / 78.03%)
 Ligation Motif Present: 154,442,752  (27.21% / 30.18%)
 3' Bias (Long Range): 66% - 34%
 Pair Type %(L-I-O-R): 25% - 25% - 25% - 25%
Inter-chromosomal: 73,606,084  (12.97% / 14.38%)
Intra-chromosomal: 325,725,131  (57.39% / 63.64%)
Short Range (<20Kb): 134,218,773  (23.65% / 26.22%)
Long Range (>20Kb): 191,502,563  (33.74% / 37.42%)